GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | cis | rs12220238 | 1 | rs10824102 | chr10:75948915 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.65 | 4.62E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824102 | chr10:75948915 | AP3M1 | chr10:75880016-75910826:- | 0.3 | 3.91 | 0.000107 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824103 | chr10:75949415 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.65 | 4.62E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824103 | chr10:75949415 | AP3M1 | chr10:75880016-75910826:- | 0.3 | 3.91 | 0.000107 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824105 | chr10:75952881 | ADK | chr10:75910965-76469059:+ | 0.33 | 4.81 | 2.13E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824105 | chr10:75952881 | AP3M1 | chr10:75880016-75910826:- | 0.31 | 3.99 | 7.82E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824105 | chr10:75952881 | MYST4 | chr10:76586379-76792639:+ | 0.23 | 3.83 | 0.000149 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824106 | chr10:75958408 | ADK | chr10:75910965-76469059:+ | -0.31 | -4.41 | 1.33E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824110 | chr10:75968098 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.71 | 3.41E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824112 | chr10:75969003 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.62 | 5.23E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824113 | chr10:75969018 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.71 | 3.41E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824114 | chr10:75970503 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.62 | 5.23E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824125 | chr10:75997498 | ADK | chr10:75910965-76469059:+ | 0.29 | 4.39 | 1.47E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824128 | chr10:76007903 | ADK | chr10:75910965-76469059:+ | 0.28 | 4.28 | 2.36E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs10824129 | chr10:76008855 | ADK | chr10:75910965-76469059:+ | 0.27 | 4.19 | 3.5E-5 | Soluble interleukin-2 receptor subunit alpha |